STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0470TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: nfa:nfa43990 putative phytoene desaturase. (496 aa)    
Predicted Functional Partners:
Afer_0469
PFAM: Squalene/phytoene synthase; KEGG: saq:Sare_4931 squalene/phytoene synthase.
 
 0.999
Afer_0471
PFAM: Polyprenyl synthetase; KEGG: saq:Sare_3478 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
  
 0.920
Afer_0817
KEGG: nfa:nfa40830 putative magnesium chelatase subunit; PFAM: ATPase associated with various cellular activities AAA_5; AAA ATPase central domain protein; von Willebrand factor type A; magnesium chelatase ChlI subunit; SMART: von Willebrand factor type A; AAA ATPase.
 
  
 0.691
Afer_0482
PFAM: fatty acid hydroxylase; KEGG: xau:Xaut_4535 carotene hydroxylase.
 
   
 0.682
Afer_0480
TIGRFAM: lycopene cyclase domain protein; KEGG: mjl:Mjls_5456 hypothetical protein.
 
   
 0.643
Afer_0481
TIGRFAM: lycopene cyclase domain protein; KEGG: mmi:MMAR_4809 lycopene cyclase, CrtYd.
 
     0.610
Afer_1302
Deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; KEGG: fal:FRAAL0101 deoxyribodipyrimidine photo- lyase.
 
  
 0.560
Afer_0472
PFAM: peptidase U62 modulator of DNA gyrase; KEGG: hmo:HM1_0268 modulator of DNA gyrase, putative.
       0.532
Afer_0473
PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pth:PTH_1159 Zn-dependent protease.
       0.532
Afer_0474
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dge:Dgeo_2010 PHP-like protein.
       0.532
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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