STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0489PFAM: glycosyl transferase group 1; KEGG: sgr:SGR_5187 putative glycosyl transferase. (409 aa)    
Predicted Functional Partners:
Afer_0491
KEGG: nfa:nfa25760 hypothetical protein.
 
     0.948
Afer_0490
PFAM: Methyltransferase type 11; Methionine biosynthesis MetW protein; Methyltransferase type 12; KEGG: tfu:Tfu_0572 hypothetical protein.
 
     0.947
Afer_0492
KEGG: sgr:SGR_5196 hypothetical protein.
 
    0.780
Afer_0488
TIGRFAM: regulatory protein, FmdB family; KEGG: kra:Krad_3694 FmdB family regulatory protein.
       0.512
Afer_0487
TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sma:SAV_3673 UTP:glucose-1-phosphate uridylyltransferase.
 
   
 0.482
Afer_1745
PFAM: glycosyl transferase group 1; KEGG: met:M446_6932 glycosyl transferase group 1.
  
     0.443
Afer_0540
PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: chu:CHU_3843 dTDP-4-dehydrorhamnose 3,5- epimerase.
  
  
 0.423
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.