STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0603PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mav:MAV_1284 Mcr protein; Belongs to the CoA-transferase III family. (373 aa)    
Predicted Functional Partners:
Afer_0602
PFAM: alpha/beta hydrolase fold; KEGG: fra:Francci3_3910 alpha/beta hydrolase fold.
 
    0.832
Afer_0600
PFAM: membrane-flanked domain; KEGG: hau:Haur_2709 membrane-flanked domain- containing protein.
       0.778
Afer_0604
KEGG: fra:Francci3_2361 hypothetical protein.
       0.778
Afer_0601
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: esa:ESA_03129 hypothetical protein.
       0.773
Afer_0599
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.648
argH
KEGG: rca:Rcas_3075 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase.
 
      0.595
Afer_0605
PFAM: Ion transport 2 domain protein; TrkA-N domain protein; KEGG: sru:SRU_0409 potassium channel, putative.
       0.592
Afer_0596
Hypothetical protein.
       0.529
Afer_0597
PFAM: alpha/beta hydrolase fold; KEGG: sru:SRU_2341 alpha/beta fold family hydrolase.
  
    0.529
Afer_0598
PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: sru:SRU_2342 Mur ligase family protein.
       0.529
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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