STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0604KEGG: fra:Francci3_2361 hypothetical protein. (399 aa)    
Predicted Functional Partners:
Afer_0205
SMART: AAA ATPase; KEGG: sco:SCO6878 ATP-binding protein.
 
  
 0.808
Afer_0684
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: sgr:SGR_4876 putative endonuclease.
   
 
 0.800
Afer_0600
PFAM: membrane-flanked domain; KEGG: hau:Haur_2709 membrane-flanked domain- containing protein.
       0.779
Afer_0602
PFAM: alpha/beta hydrolase fold; KEGG: fra:Francci3_3910 alpha/beta hydrolase fold.
       0.778
Afer_0603
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mav:MAV_1284 Mcr protein; Belongs to the CoA-transferase III family.
       0.778
Afer_0576
PFAM: TrwC relaxase; KEGG: fal:FRAAL6333 putative conjugal transfer protein TraA.
 
   
 0.774
Afer_0601
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: esa:ESA_03129 hypothetical protein.
       0.773
Afer_0599
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
     0.728
Afer_0299
KEGG: cyt:cce_4767 hypothetical protein.
 
    0.696
Afer_0598
PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: sru:SRU_2342 Mur ligase family protein.
 
     0.650
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.