STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0607PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_1175 GCN5-related N- acetyltransferase. (226 aa)    
Predicted Functional Partners:
Afer_1207
KEGG: sma:SAV_4866 hypothetical protein.
  
     0.684
Afer_0776
PFAM: protein of unknown function DUF664; KEGG: sco:SCO1340 hypothetical protein.
  
     0.667
Afer_1338
Putative transcriptional regulator; SMART: regulatory protein ArsR; KEGG: stp:Strop_2302 regulatory protein, ArsR.
  
     0.658
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.587
Afer_0606
KEGG: fra:Francci3_2206 hypothetical protein.
       0.580
Afer_0609
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tbd:Tbd_0690 HAD family hydrolase.
       0.566
Afer_0608
PFAM: peptidase C26; glutamine amidotransferase class-I; KEGG: mta:Moth_2164 peptidase C26.
       0.565
Afer_1205
KEGG: sco:SCO4586 ABC transporter integral membrane protein.
  
     0.560
Afer_1197
KEGG: msm:MSMEG_6365 hypothetical protein.
 
     0.541
Afer_1790
Dipeptidylaminopeptidase/acylaminoacyl- peptidase-like protein; KEGG: pmy:Pmen_1970 peptidase S9 prolyl oligopeptidase.
  
     0.477
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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