Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Afer_0666PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eba:p2A122 putative taurine transport system permease protein. (271 aa)    
Predicted Functional Partners:
Afer_0667
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mem:Memar_0849 ABC transporter-related protein.
 
 0.999
Afer_0665
PFAM: NMT1/THI5 like domain protein; KEGG: rpc:RPC_0844 ABC transporter substrate- binding protein.
 
 
 0.996
Afer_0668
SOS-response transcriptional repressor, LexA; KEGG: nfa:nfa38000 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein; Belongs to the peptidase S24 family.
 
     0.786
nrdR
ATP-cone domain protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
       0.527
Afer_0791
PFAM: Luciferase-like monooxygenase; KEGG: fal:FRAAL2800 hypothetical protein.
 
  
 0.481
Afer_0670
KEGG: tfu:Tfu_0325 hypothetical protein.
       0.469
Afer_0671
KEGG: reh:H16_A1148 predicted NADH:ubiquinone oxidoreductase,subunit RnfB.
       0.463
Afer_1383
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mva:Mvan_5739 ABC transporter-related protein; Belongs to the ABC transporter superfamily.
     0.463
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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