STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0670KEGG: tfu:Tfu_0325 hypothetical protein. (154 aa)    
Predicted Functional Partners:
Afer_0671
KEGG: reh:H16_A1148 predicted NADH:ubiquinone oxidoreductase,subunit RnfB.
       0.762
nrdR
ATP-cone domain protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
       0.698
Afer_0183
PFAM: Transglycosylase domain protein; KEGG: fre:Franean1_0215 transglycosylase domain- containing protein.
  
     0.575
Afer_0258
KEGG: cef:CE1107 hypothetical protein.
  
     0.575
Afer_1064
PFAM: protein of unknown function DUF1212; KEGG: rha:RHA1_ro04718 amino acid export carrier protein.
  
     0.571
Afer_0794
KEGG: mmi:MMAR_0699 hypothetical protein.
  
     0.495
Afer_0668
SOS-response transcriptional repressor, LexA; KEGG: nfa:nfa38000 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein; Belongs to the peptidase S24 family.
       0.481
Afer_0666
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eba:p2A122 putative taurine transport system permease protein.
       0.469
Afer_0667
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mem:Memar_0849 ABC transporter-related protein.
       0.469
Afer_0259
KEGG: kra:Krad_1834 hypothetical protein.
  
     0.464
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.