STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0681Hypothetical protein; KEGG: afw:Anae109_0918 TfuA domain-containing protein. (126 aa)    
Predicted Functional Partners:
Afer_0680
PFAM: LmbE family protein; KEGG: cau:Caur_0355 LmbE family protein.
       0.752
Afer_0679
PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: afw:Anae109_3740 threonine aldolase.
       0.707
Afer_0682
KEGG: fra:Francci3_1402 hypothetical protein.
       0.508
Afer_0683
Hypothetical protein.
       0.508
Afer_0678
PFAM: transposase IS3/IS911 family protein; KEGG: rxy:Rxyl_1861 transposase IS3/IS911.
       0.448
Afer_0684
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: sgr:SGR_4876 putative endonuclease.
       0.426
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.