STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0682KEGG: fra:Francci3_1402 hypothetical protein. (118 aa)    
Predicted Functional Partners:
Afer_0683
Hypothetical protein.
       0.773
Afer_0380
KEGG: sen:SACE_2172 hypothetical protein.
  
   
 0.724
Afer_1882
KEGG: ace:Acel_0470 hypothetical protein.
  
     0.680
Afer_0684
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: sgr:SGR_4876 putative endonuclease.
       0.660
Afer_0583
Hypothetical protein; KEGG: art:Arth_2181 transcriptional regulator-like protein.
  
     0.564
Afer_1195
KEGG: scl:sce0507 hypothetical protein.
  
     0.563
mshD
Mycothiol biosynthesis acetyltransferase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol.
 
     0.541
Afer_1733
PFAM: alpha/beta hydrolase fold; KEGG: fre:Franean1_2175 alpha/beta hydrolase fold.
  
     0.527
Afer_0938
PFAM: cyclase/dehydrase; KEGG: fal:FRAAL0171 hypothetical protein.
  
     0.517
Afer_0681
Hypothetical protein; KEGG: afw:Anae109_0918 TfuA domain-containing protein.
       0.508
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.