Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Afer_0708 | Afer_0709 | PFAM: RimK domain protein ATP-grasp; protein of unknown function DUF201; KEGG: mpn:MPN015 hypothetical protein. | TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; KEGG: oih:OB2059 hypothetical protein; Belongs to the RimK family. | 0.954 |
Afer_0708 | Afer_0710 | PFAM: RimK domain protein ATP-grasp; protein of unknown function DUF201; KEGG: mpn:MPN015 hypothetical protein. | Hypothetical protein; KEGG: reh:H16_A3625 predicted alpha/beta hydrolase BEM46. | 0.550 |
Afer_0709 | Afer_0708 | TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; KEGG: oih:OB2059 hypothetical protein; Belongs to the RimK family. | PFAM: RimK domain protein ATP-grasp; protein of unknown function DUF201; KEGG: mpn:MPN015 hypothetical protein. | 0.954 |
Afer_0709 | Afer_0710 | TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; KEGG: oih:OB2059 hypothetical protein; Belongs to the RimK family. | Hypothetical protein; KEGG: reh:H16_A3625 predicted alpha/beta hydrolase BEM46. | 0.550 |
Afer_0710 | Afer_0708 | Hypothetical protein; KEGG: reh:H16_A3625 predicted alpha/beta hydrolase BEM46. | PFAM: RimK domain protein ATP-grasp; protein of unknown function DUF201; KEGG: mpn:MPN015 hypothetical protein. | 0.550 |
Afer_0710 | Afer_0709 | Hypothetical protein; KEGG: reh:H16_A3625 predicted alpha/beta hydrolase BEM46. | TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; KEGG: oih:OB2059 hypothetical protein; Belongs to the RimK family. | 0.550 |