STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0745PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; KEGG: afe:Lferr_2889 NAD-dependent epimerase/dehydratase. (308 aa)    
Predicted Functional Partners:
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 
0.924
Afer_0742
PFAM: glycosyl transferase group 1; KEGG: fre:Franean1_5894 glycosyl transferase group 1.
 
  
 0.856
Afer_0743
PFAM: glycosyl transferase group 1; KEGG: ace:Acel_0448 glycosyl transferase, group 1.
 
  
 0.848
Afer_0744
PFAM: glycosyl transferase group 1; KEGG: fra:Francci3_0735 glycosyl transferase, group 1.
 
  
 0.846
Afer_0746
PFAM: glycosyl transferase family 2; KEGG: ace:Acel_0460 glycosyl transferase family protein.
       0.765
Afer_0747
KEGG: aau:AAur_1312 hypothetical protein.
       0.754
Afer_1747
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL1238 ABC transporter ATP-binding protein (partial match).
  
 0.564
Afer_0740
TIGRFAM: F420-dependent oxidoreductase; PFAM: protein of unknown function DUF129; KEGG: sco:SCO3037 F420-0--gamma-glutamyl ligase.
       0.547
Afer_0741
TIGRFAM: LPPG domain protein containing protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: rxy:Rxyl_0958 LPPG:Fo 2-phospho-L-lactate transferase.
       0.547
Afer_0739
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: sth:STH2715 UDP-glucose 4-epimerase.
 
 
0.520
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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