STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0746PFAM: glycosyl transferase family 2; KEGG: ace:Acel_0460 glycosyl transferase family protein. (951 aa)    
Predicted Functional Partners:
Afer_0747
KEGG: aau:AAur_1312 hypothetical protein.
       0.828
Afer_0744
PFAM: glycosyl transferase group 1; KEGG: fra:Francci3_0735 glycosyl transferase, group 1.
 
    0.822
Afer_0743
PFAM: glycosyl transferase group 1; KEGG: ace:Acel_0448 glycosyl transferase, group 1.
 
    0.811
Afer_0742
PFAM: glycosyl transferase group 1; KEGG: fre:Franean1_5894 glycosyl transferase group 1.
 
    0.803
Afer_0540
PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: chu:CHU_3843 dTDP-4-dehydrorhamnose 3,5- epimerase.
 
  
 0.772
Afer_0736
KEGG: sen:SACE_6472 putative dTDP-rhamnosyl transferase.
  
     0.763
Afer_0745
PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; KEGG: afe:Lferr_2889 NAD-dependent epimerase/dehydratase.
       0.761
Afer_1974
PFAM: glycosyl transferase family 2; KEGG: met:M446_0315 glycosyl transferase family protein.
  
     0.723
Afer_0735
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
  
 0.677
Afer_1748
PFAM: ABC-2 type transporter; KEGG: fra:Francci3_0724 hypothetical protein.
 
  
 0.669
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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