Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0747KEGG: aau:AAur_1312 hypothetical protein. (472 aa)    
Predicted Functional Partners:
Afer_0746
PFAM: glycosyl transferase family 2; KEGG: ace:Acel_0460 glycosyl transferase family protein.
       0.828
Afer_0745
PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; KEGG: afe:Lferr_2889 NAD-dependent epimerase/dehydratase.
       0.752
Afer_0743
PFAM: glycosyl transferase group 1; KEGG: ace:Acel_0448 glycosyl transferase, group 1.
       0.733
Afer_0742
PFAM: glycosyl transferase group 1; KEGG: fre:Franean1_5894 glycosyl transferase group 1.
       0.726
Afer_0744
PFAM: glycosyl transferase group 1; KEGG: fra:Francci3_0735 glycosyl transferase, group 1.
       0.726
Afer_0740
TIGRFAM: F420-dependent oxidoreductase; PFAM: protein of unknown function DUF129; KEGG: sco:SCO3037 F420-0--gamma-glutamyl ligase.
       0.526
Afer_0741
TIGRFAM: LPPG domain protein containing protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: rxy:Rxyl_0958 LPPG:Fo 2-phospho-L-lactate transferase.
       0.526
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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