STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0778PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: acr:Acry_2202 ABC transporter related. (238 aa)    
Predicted Functional Partners:
Afer_0779
PFAM: inner-membrane translocator; KEGG: acr:Acry_2203 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
Afer_0780
PFAM: inner-membrane translocator; KEGG: acr:Acry_2204 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.998
Afer_0506
PFAM: inner-membrane translocator; KEGG: cya:CYA_2478 hydrophobic amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 0.997
Afer_0777
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: acr:Acry_2201 ABC transporter related.
 
 
0.994
Afer_0507
PFAM: inner-membrane translocator; KEGG: csa:Csal_1420 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.993
Afer_0781
KEGG: acr:Acry_2205 extracellular ligand-binding receptor.
 
 
 0.993
Afer_0504
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cya:CYA_2623 hydrophobic amino acid ABC transporter ATP-binding protein.
 
 
0.969
Afer_0503
PFAM: Extracellular ligand-binding receptor; KEGG: hwa:HQ3303A ABC-type branched-chain amino acid transport systems, substrate-binding protein.
 
  
 0.732
Afer_1060
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgr:SGR_3233 putative ABC-transporter ATP- binding protein.
 
     0.619
Afer_0332
Heme exporter protein CcmA; KEGG: nca:Noca_1952 ABC transporter related; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase.
  
     0.616
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.