STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0784PFAM: VWA containing CoxE family protein; KEGG: fre:Franean1_5254 VWA containing CoxE family protein. (444 aa)    
Predicted Functional Partners:
Afer_0783
PFAM: ATPase associated with various cellular activities AAA_5; ATPase associated with various cellular activities AAA_3; SMART: AAA ATPase; KEGG: sma:SAV_1448 MoxR-like ATPase.
    0.960
Afer_1567
PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rha:RHA1_ro04979 MoxR family ATPase.
 
    0.793
proA
Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.
       0.766
Afer_1784
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: mab:MAB_3296 hypothetical protein.
  
     0.654
Afer_1566
PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: rha:RHA1_ro04978 hypothetical protein.
  
     0.592
Afer_0828
PFAM: conserved hypothetical protein; KEGG: rxy:Rxyl_2377 conserved hypothetical protein 374.
  
     0.525
Afer_0797
PFAM: acyl-ACP thioesterase; KEGG: nfa:nfa20140 hypothetical protein.
  
     0.477
Afer_0565
KEGG: mjl:Mjls_0441 ferredoxin (3Fe-4S).
  
     0.456
Afer_1448
KEGG: fre:Franean1_0153 major facilitator transporter.
  
     0.449
Afer_1030
KEGG: sen:SACE_3125 hypothetical protein.
  
     0.437
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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