STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0794KEGG: mmi:MMAR_0699 hypothetical protein. (123 aa)    
Predicted Functional Partners:
Afer_0793
PFAM: major facilitator superfamily MFS_1; KEGG: pto:PTO1278 transporter.
       0.592
Afer_1827
PFAM: cytochrome c class I; KEGG: fre:Franean1_1810 cytochrome c class I.
  
     0.532
Afer_0670
KEGG: tfu:Tfu_0325 hypothetical protein.
  
     0.495
Afer_1826
PFAM: Rieske [2Fe-2S] domain protein; KEGG: fal:FRAAL5110 ubiquinol-cytochrome c reductase iron-sulfur subunit (Rieske iron-sulfur protein).
  
     0.491
Afer_0835
KEGG: saq:Sare_3891 hypothetical protein.
  
     0.425
Afer_0795
Hypothetical protein.
       0.420
Afer_0283
KEGG: mab:MAB_2457c hypothetical protein.
  
     0.419
Afer_0797
PFAM: acyl-ACP thioesterase; KEGG: nfa:nfa20140 hypothetical protein.
 
     0.408
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.