STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0874PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: cmi:CMM_0968 phosphoenolpyruvate--protein phosphatase; Belongs to the PEP-utilizing enzyme family. (536 aa)    
Predicted Functional Partners:
Afer_0884
PFAM: phosphoryl transfer system HPr; KEGG: lsp:Bsph_2351 phosphocarrier protein HPr (histidine-containing protein).
    
  0.943
Afer_0879
PFAM: PTS system fructose subfamily IIA component; KEGG: rsa:RSal33209_3182 dihydroxyacetone kinase phosphotransfer protein.
 
   
 0.776
Afer_0875
TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: sco:SCO4057 transport integral membrane protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
 
   
 0.641
Afer_0878
TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: lxx:Lxx09880 dihydroxyacetone kinase.
 
  
 0.632
Afer_0877
KEGG: hmo:HM1_0840 dihydroxyacetone kinase, dhak subunit; TIGRFAM: dihydroxyacetone kinase, DhaK subunit; PFAM: Dak kinase.
  
  
 0.574
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
     
 0.564
Afer_0166
TIGRFAM: transketolase; fructose-1,6- bisphosphatase, class II; PFAM: GlpX family protein; Transketolase domain protein; Transketolase central region; KEGG: ttj:TTHA0108 transketolase; Belongs to the transketolase family.
 
  
 0.553
Afer_0880
PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rca:Rcas_4111 FAD dependent oxidoreductase.
     
 0.530
Afer_0883
PFAM: glycerol-3-phosphate responsive antiterminator; KEGG: tte:TTE2004 glycerol-3-phosphate responsive antiterminator (mRNA-binding).
 
     0.518
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
  
 0.503
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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