STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0938PFAM: cyclase/dehydrase; KEGG: fal:FRAAL0171 hypothetical protein. (160 aa)    
Predicted Functional Partners:
Afer_0937
PFAM: glycosyl transferase group 1; KEGG: rxy:Rxyl_0383 glycosyl transferase, group 1.
  
    0.763
Afer_1448
KEGG: fre:Franean1_0153 major facilitator transporter.
  
     0.735
Afer_0237
PFAM: Anion-transporting ATPase; KEGG: rha:RHA1_ro04317 arsenate (2+)-transporting ATPase.
 
     0.705
Afer_0350
ATPase involved in chromosome partitioning; KEGG: fre:Franean1_0335 anion-transporting ATPase.
 
     0.701
Afer_0238
PFAM: Anion-transporting ATPase; KEGG: ank:AnaeK_0988 chromosome partitioning-like ATPase.
 
     0.604
Afer_1997
PFAM: ribonuclease BN; KEGG: ace:Acel_1654 ribonuclease BN.
  
     0.576
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
    0.562
Afer_0939
PFAM: aminotransferase class I and II; KEGG: aae:aq_2094 aminotransferase.
       0.538
Afer_1030
KEGG: sen:SACE_3125 hypothetical protein.
  
     0.524
Afer_0682
KEGG: fra:Francci3_1402 hypothetical protein.
  
     0.517
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.