STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0955Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: ace:Acel_0950 phage shock protein A, PspA. (372 aa)    
Predicted Functional Partners:
Afer_1637
PFAM: protein of unknown function DUF1707; KEGG: sco:SCO2893 hypothetical protein.
 
  
 0.824
Afer_1353
KEGG: ace:Acel_0953 hypothetical protein.
 
     0.822
Afer_0556
PFAM: protein of unknown function DUF1707; KEGG: sco:SCO5045 hypothetical protein.
  
     0.536
Afer_1991
PFAM: beta-lactamase domain protein; KEGG: tfu:Tfu_2040 Zn-dependent hydrolase.
  
     0.535
Afer_0956
TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: nca:Noca_3461 rod shape-determining protein RodA; Belongs to the SEDS family.
       0.523
Afer_0957
PFAM: protein of unknown function DUF151; KEGG: sth:STH3179 hypothetical protein.
       0.523
htpX
PFAM: peptidase M48 Ste24p; KEGG: ace:Acel_0952 heat shock protein HtpX; Belongs to the peptidase M48B family.
 
    0.521
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.