STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0976KEGG: nca:Noca_2931 putative NADH dehydrogenase. (163 aa)    
Predicted Functional Partners:
Afer_1026
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerization region; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: cef:CE0339 putative pyridine nucleotide- disulphide oxidoreductase.
  
 0.939
Afer_1858
PFAM: pyridine nucleotide-disulphide oxidoreductase dimerization region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: mab:MAB_4865 putative pyridine nucleotide- disulphide oxidoreductase.
      0.901
Afer_0962
PFAM: SirA family protein; KEGG: sso:SSO8861 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
 
  
 0.832
Afer_1404
KEGG: kcr:Kcr_1535 SirA family protein; Belongs to the sulfur carrier protein TusA family.
 
  
 0.805
Afer_0977
PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_1655 Rieske (2Fe-2S) domain- containing protein.
       0.788
Afer_0963
PFAM: DsrE family protein; KEGG: afu:AF0187 hypothetical protein.
 
   
 0.709
Afer_0975
Hypothetical protein.
       0.488
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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