Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Afer_0251 | Afer_0971 | TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: sus:Acid_3181 uroporphyrinogen-III C- methyltransferase / uroporphyrinogen-III synthase; Belongs to the precorrin methyltransferase family. | PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: bph:Bphy_5959 hypothetical protein. | 0.759 |
Afer_0251 | Afer_0977 | TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: sus:Acid_3181 uroporphyrinogen-III C- methyltransferase / uroporphyrinogen-III synthase; Belongs to the precorrin methyltransferase family. | PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_1655 Rieske (2Fe-2S) domain- containing protein. | 0.863 |
Afer_0251 | Afer_1988 | TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: sus:Acid_3181 uroporphyrinogen-III C- methyltransferase / uroporphyrinogen-III synthase; Belongs to the precorrin methyltransferase family. | PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: ace:Acel_1078 glutamate synthase (NADH) large subunit. | 0.590 |
Afer_0606 | Afer_0977 | KEGG: fra:Francci3_2206 hypothetical protein. | PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_1655 Rieske (2Fe-2S) domain- containing protein. | 0.570 |
Afer_0971 | Afer_0251 | PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: bph:Bphy_5959 hypothetical protein. | TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: sus:Acid_3181 uroporphyrinogen-III C- methyltransferase / uroporphyrinogen-III synthase; Belongs to the precorrin methyltransferase family. | 0.759 |
Afer_0971 | Afer_0977 | PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: bph:Bphy_5959 hypothetical protein. | PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_1655 Rieske (2Fe-2S) domain- containing protein. | 0.448 |
Afer_0975 | Afer_0976 | Hypothetical protein. | KEGG: nca:Noca_2931 putative NADH dehydrogenase. | 0.488 |
Afer_0975 | Afer_0977 | Hypothetical protein. | PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_1655 Rieske (2Fe-2S) domain- containing protein. | 0.488 |
Afer_0976 | Afer_0975 | KEGG: nca:Noca_2931 putative NADH dehydrogenase. | Hypothetical protein. | 0.488 |
Afer_0976 | Afer_0977 | KEGG: nca:Noca_2931 putative NADH dehydrogenase. | PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_1655 Rieske (2Fe-2S) domain- containing protein. | 0.788 |
Afer_0977 | Afer_0251 | PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_1655 Rieske (2Fe-2S) domain- containing protein. | TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: sus:Acid_3181 uroporphyrinogen-III C- methyltransferase / uroporphyrinogen-III synthase; Belongs to the precorrin methyltransferase family. | 0.863 |
Afer_0977 | Afer_0606 | PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_1655 Rieske (2Fe-2S) domain- containing protein. | KEGG: fra:Francci3_2206 hypothetical protein. | 0.570 |
Afer_0977 | Afer_0971 | PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_1655 Rieske (2Fe-2S) domain- containing protein. | PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: bph:Bphy_5959 hypothetical protein. | 0.448 |
Afer_0977 | Afer_0975 | PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_1655 Rieske (2Fe-2S) domain- containing protein. | Hypothetical protein. | 0.488 |
Afer_0977 | Afer_0976 | PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_1655 Rieske (2Fe-2S) domain- containing protein. | KEGG: nca:Noca_2931 putative NADH dehydrogenase. | 0.788 |
Afer_0977 | Afer_1988 | PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_1655 Rieske (2Fe-2S) domain- containing protein. | PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: ace:Acel_1078 glutamate synthase (NADH) large subunit. | 0.538 |
Afer_1988 | Afer_0251 | PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: ace:Acel_1078 glutamate synthase (NADH) large subunit. | TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: sus:Acid_3181 uroporphyrinogen-III C- methyltransferase / uroporphyrinogen-III synthase; Belongs to the precorrin methyltransferase family. | 0.590 |
Afer_1988 | Afer_0977 | PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: ace:Acel_1078 glutamate synthase (NADH) large subunit. | PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_1655 Rieske (2Fe-2S) domain- containing protein. | 0.538 |