STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_0996PFAM: PfkB domain protein; KEGG: saq:Sare_3490 ribokinase-like domain- containing protein. (298 aa)    
Predicted Functional Partners:
Afer_1328
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: bra:BRADO0511 alpha-glucosidase.
 
 
 0.928
Afer_0432
TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; KEGG: tfu:Tfu_2611 D-fructose-6-phosphate amidotransferase.
   
 0.912
pgi
PFAM: phosphoglucose isomerase (PGI); KEGG: nfa:nfa49980 glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.911
Afer_1766
PFAM: sugar isomerase (SIS); KEGG: dau:Daud_0299 bifunctional phosphoglucose/phosphomannose isomerase.
  
 
 0.910
Afer_1792
TIGRFAM: fructose-1,6-bisphosphatase, class II; PFAM: GlpX family protein; KEGG: nfa:nfa48000 fructose 1,6-bisphosphatase II.
    
 0.904
Afer_0994
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: acr:Acry_1366 periplasmic binding protein/LacI transcriptional regulator.
 
  
 0.859
Afer_0992
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msm:MSMEG_1372 ABC transporter ATP-binding protein.
 
  
 0.833
Afer_0993
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: rxy:Rxyl_0947 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.825
Afer_1574
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mva:Mvan_5292 ABC transporter-related protein.
 
  
 0.717
Afer_0995
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: cmi:CMM_2841 LacI family transcriptional regulator.
 
  
 0.705
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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