STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1059PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nca:Noca_2866 ABC transporter related. (283 aa)    
Predicted Functional Partners:
Afer_1058
PFAM: protein of unknown function DUF214; KEGG: nca:Noca_2867 hypothetical protein.
  
 
 0.972
Afer_1311
PFAM: protein of unknown function DUF214; KEGG: lxx:Lxx03110 integral membrane protein.
 
 
 0.954
Afer_0270
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: hau:Haur_0337 ABC transporter related.
   
0.876
Afer_1207
KEGG: sma:SAV_4866 hypothetical protein.
 
 
 
 0.824
Afer_1060
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgr:SGR_3233 putative ABC-transporter ATP- binding protein.
 
    
0.820
Afer_0191
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1989 ABC-type multidrug transport system ATPase componen.
  
0.629
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
   
 0.578
Afer_1143
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_4338 binding-protein-dependent transport systems inner membrane component.
 
 
    0.578
Afer_0173
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lxx:Lxx23070 ABC transporter, permease protein.
 
 
    0.556
Afer_0082
Histidine--tRNA ligase; PFAM: tRNA synthetase class II (G H P and S); KEGG: cms:CMS_2457 histidyl-tRNA synthetase.
  
   
 0.472
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.