STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1062PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_3045 major facilitator superfamily permease. (423 aa)    
Predicted Functional Partners:
Afer_1338
Putative transcriptional regulator; SMART: regulatory protein ArsR; KEGG: stp:Strop_2302 regulatory protein, ArsR.
 
     0.645
Afer_1227
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: atc:AGR_C_1212 hypothetical protein.
  
   
 0.599
Afer_1207
KEGG: sma:SAV_4866 hypothetical protein.
  
     0.555
Afer_0287
PFAM: Negative transcriptional regulator; KEGG: sen:SACE_2130 hypothetical protein.
  
     0.548
Afer_1063
KEGG: ooe:OEOE_0191 hypothetical protein.
       0.524
Afer_1065
PFAM: major facilitator superfamily MFS_1; KEGG: nca:Noca_3966 major facilitator transporter.
 
     0.479
Afer_0886
PFAM: extracellular solute-binding protein family 5; KEGG: saq:Sare_4778 extracellular solute-binding protein.
  
     0.468
Afer_1141
PFAM: extracellular solute-binding protein family 5; KEGG: saq:Sare_2145 extracellular solute-binding protein.
  
     0.447
Afer_1789
PFAM: regulatory protein TetR; KEGG: sgr:SGR_6910 TetR family transcriptional regulator.
  
     0.432
Afer_0508
Response regulator receiver and unknown domain protein; PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sgr:SGR_1695 putative two-component system response regulator.
  
     0.431
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.