STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1065PFAM: major facilitator superfamily MFS_1; KEGG: nca:Noca_3966 major facilitator transporter. (404 aa)    
Predicted Functional Partners:
Afer_1062
PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_3045 major facilitator superfamily permease.
 
     0.479
Afer_1064
PFAM: protein of unknown function DUF1212; KEGG: rha:RHA1_ro04718 amino acid export carrier protein.
  
    0.464
Afer_0081
PFAM: Peptidase S53 propeptide; KEGG: cac:CAC0625 periplasmic aspartyl protease.
  
     0.435
Afer_0196
PFAM: Peptidase S53 propeptide; KEGG: cac:CAC0625 periplasmic aspartyl protease.
  
     0.428
Afer_0886
PFAM: extracellular solute-binding protein family 5; KEGG: saq:Sare_4778 extracellular solute-binding protein.
  
     0.423
Afer_1338
Putative transcriptional regulator; SMART: regulatory protein ArsR; KEGG: stp:Strop_2302 regulatory protein, ArsR.
  
     0.418
Afer_0025
PFAM: GCN5-related N-acetyltransferase; KEGG: cau:Caur_1705 GCN5-related N- acetyltransferase.
  
     0.415
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.