STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1071PFAM: Peptidase S53 propeptide; KEGG: bph:Bphy_5054 peptidase S53 propeptide. (507 aa)    
Predicted Functional Partners:
Afer_0296
PFAM: protein of unknown function DUF74; KEGG: afe:Lferr_1683 hypothetical protein.
  
     0.707
Afer_1070
Asparaginase; PFAM: peptidase T2 asparaginase 2; KEGG: rca:Rcas_4430 asparaginase.
       0.678
Afer_0476
KEGG: ace:Acel_0596 natural resistance-associated macrophage protein.
  
     0.606
Afer_0521
PFAM: phosphoesterase; KEGG: sai:Saci_1769 membrane associated phosphoesterase.
  
     0.571
Afer_0999
Hypothetical protein; KEGG: nca:Noca_3830 ferric reductase domain- containing protein.
  
     0.548
Afer_1897
PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: rha:RHA1_ro01635 permease for cytosine/purines, uracil, thiamine, allantoin; Belongs to the purine-cytosine permease (2.A.39) family.
  
     0.492
Afer_1069
KEGG: scl:sce5793 hypothetical protein.
       0.491
Afer_0308
KEGG: mav:MAV_4571 metal ion transporter, nramp family protein.
  
     0.455
Afer_1098
PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL4785 putative mutidrug efflux permease.
  
     0.452
Afer_0433
PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: rce:RC1_0015 C4-dicarboxylate transporter.
  
     0.443
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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