STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1122PFAM: CDP-alcohol phosphatidyltransferase; KEGG: kra:Krad_3101 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (192 aa)    
Predicted Functional Partners:
Afer_1225
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: saq:Sare_1773 CDP-alcohol phosphatidyltransferase.
    
 0.947
Afer_0651
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: mbb:BCG_2762c putative pgp synthase pgsA3; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
  
 0.943
Afer_0630
PFAM: phosphatidate cytidylyltransferase; KEGG: sth:STH1497 phosphatidate cytidylyltransferase; Belongs to the CDS family.
    
 0.926
Afer_0652
TIGRFAM: competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; KEGG: fal:FRAAL5732 competence-inducible (CinA- like) protein; Belongs to the CinA family.
  
  
 0.869
Afer_1125
FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: ace:Acel_1226 FHA domain-containing protein.
 
    0.733
Afer_1126
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sma:SAV_6982 hypothetical protein.
 
     0.731
Afer_1123
PFAM: Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; transferase hexapeptide repeat containing protein; KEGG: tfu:Tfu_1394 mannose-1-phosphate guanylyltransferase.
  
   0.730
gcvH-2
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
  
    0.664
Afer_0541
KEGG: acr:Acry_1011 hypothetical protein.
  
    0.629
Afer_1121
Hypothetical protein.
       0.557
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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