STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1147KEGG: saq:Sare_4781 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (676 aa)    
Predicted Functional Partners:
Afer_1143
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_4338 binding-protein-dependent transport systems inner membrane component.
 
 0.992
Afer_0885
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: saq:Sare_4780 binding-protein-dependent transport systems inner membrane component.
 
 0.988
Afer_0888
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: saq:Sare_4780 binding-protein-dependent transport systems inner membrane component.
 
 0.988
Afer_0173
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lxx:Lxx23070 ABC transporter, permease protein.
 
 0.984
Afer_1142
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_4337 binding-protein-dependent transport systems inner membrane component.
 
 0.945
Afer_0887
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO6113 peptide ABC transporter integral membrane protein.
 
 0.936
Afer_0172
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mxa:MXAN_6552 putative oligopeptide/dipeptide ABC transporter, permease protein.
 
 0.826
Afer_0174
KEGG: reh:H16_A1303 ABC-type transporter, ATPase component: PepT family; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
  
 0.642
Afer_1070
Asparaginase; PFAM: peptidase T2 asparaginase 2; KEGG: rca:Rcas_4430 asparaginase.
 
  
 0.492
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.