Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1205KEGG: sco:SCO4586 ABC transporter integral membrane protein. (266 aa)    
Predicted Functional Partners:
Afer_1207
KEGG: sma:SAV_4866 hypothetical protein.
 
     0.957
Afer_1206
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aau:AAur_2052 putative antibiotic ABC transporter, ATP-binding protein.
 
 
 0.949
Afer_0118
KEGG: fal:FRAAL2980 putative ABC transporter transmembrane protein.
 
 
 0.748
Afer_1300
PFAM: FMN-binding domain protein; KEGG: ace:Acel_0050 FMN-binding domain-containing protein.
  
     0.725
Afer_0809
KEGG: rha:RHA1_ro01772 hypothetical protein.
  
     0.613
Afer_1822
Hypothetical protein; KEGG: fal:FRAAL5121 putative integral membrane protein.
  
     0.580
Afer_0607
PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_1175 GCN5-related N- acetyltransferase.
  
   
 0.561
Afer_2029
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: kra:Krad_1516 ABC transporter-related protein.
  
   
 0.555
Afer_1204
Hypothetical protein.
       0.548
Afer_0191
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1989 ABC-type multidrug transport system ATPase componen.
  
 
 0.534
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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