STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1207KEGG: sma:SAV_4866 hypothetical protein. (392 aa)    
Predicted Functional Partners:
Afer_1205
KEGG: sco:SCO4586 ABC transporter integral membrane protein.
 
     0.955
Afer_1311
PFAM: protein of unknown function DUF214; KEGG: lxx:Lxx03110 integral membrane protein.
 
 
 
 0.924
Afer_1206
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aau:AAur_2052 putative antibiotic ABC transporter, ATP-binding protein.
 
     0.882
Afer_1059
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nca:Noca_2866 ABC transporter related.
 
 
 
 0.824
Afer_1060
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgr:SGR_3233 putative ABC-transporter ATP- binding protein.
   
 
 0.798
Afer_1310
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_5911 ABC transporter ATP-binding protein.
   
 
 0.798
Afer_1300
PFAM: FMN-binding domain protein; KEGG: ace:Acel_0050 FMN-binding domain-containing protein.
  
    0.712
Afer_0607
PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_1175 GCN5-related N- acetyltransferase.
  
     0.684
Afer_0809
KEGG: rha:RHA1_ro01772 hypothetical protein.
  
     0.635
Afer_1338
Putative transcriptional regulator; SMART: regulatory protein ArsR; KEGG: stp:Strop_2302 regulatory protein, ArsR.
 
     0.609
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.