STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1223PFAM: glycosyl transferase group 1; KEGG: afw:Anae109_4290 phosphatidylinositol alpha- mannosyltransferase. (355 aa)    
Predicted Functional Partners:
Afer_1224
PFAM: lipid A biosynthesis acyltransferase; KEGG: tfu:Tfu_2102 lipid A biosynthesis lauroyl acyltransferase.
 
   
 0.857
Afer_1222
Hypothetical protein; KEGG: saq:Sare_0473 NADH dehydrogenase (quinone).
       0.773
Afer_0937
PFAM: glycosyl transferase group 1; KEGG: rxy:Rxyl_0383 glycosyl transferase, group 1.
  
     0.754
Afer_1744
PFAM: glycosyl transferase group 1; KEGG: mxa:MXAN_4614 glycosyl transferase, group 1 family protein.
  
     0.721
Afer_0744
PFAM: glycosyl transferase group 1; KEGG: fra:Francci3_0735 glycosyl transferase, group 1.
  
     0.694
Afer_0743
PFAM: glycosyl transferase group 1; KEGG: ace:Acel_0448 glycosyl transferase, group 1.
  
     0.649
pdxT
SNO glutamine amidotransferase; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.
       0.631
pdxS
Pyridoxine biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.
       0.631
Afer_1975
PFAM: glycosyl transferase group 1; KEGG: jan:Jann_4283 glycosyl transferase, group 1.
  
     0.630
Afer_1225
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: saq:Sare_1773 CDP-alcohol phosphatidyltransferase.
 
  
 0.615
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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