STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1287PFAM: GPR1/FUN34/yaaH family protein; KEGG: pth:PTH_2591 hypothetical protein. (255 aa)    
Predicted Functional Partners:
Afer_1286
TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: ace:Acel_1984 acetyl-coenzyme A synthetase.
  
  
 0.812
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
    0.584
Afer_0433
PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: rce:RC1_0015 C4-dicarboxylate transporter.
  
     0.571
Afer_0296
PFAM: protein of unknown function DUF74; KEGG: afe:Lferr_1683 hypothetical protein.
  
     0.500
Afer_1379
PFAM: major facilitator superfamily MFS_1; KEGG: ade:Adeh_3709 major facilitator transporter.
  
     0.469
Afer_1285
KEGG: fre:Franean1_3861 protein tyrosine/serine phosphatase.
       0.418
Afer_1283
Hypothetical protein.
       0.413
Afer_1284
Hypothetical protein; KEGG: rso:RS05070 putative hemagglutinin/hemolysin- related protein.
       0.413
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.