STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1301PFAM: Ferric reductase domain protein transmembrane component domain; FAD-binding 8 domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sma:SAV_2194 oxidoreductase. (447 aa)    
Predicted Functional Partners:
Afer_1300
PFAM: FMN-binding domain protein; KEGG: ace:Acel_0050 FMN-binding domain-containing protein.
 
     0.955
Afer_1299
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
     0.952
Afer_0606
KEGG: fra:Francci3_2206 hypothetical protein.
  
     0.577
Afer_0226
PFAM: Vitamin K epoxide reductase; SMART: Vitamin K epoxide reductase; KEGG: ace:Acel_2066 vitamin K epoxide reductase.
  
     0.570
Afer_1302
Deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; KEGG: fal:FRAAL0101 deoxyribodipyrimidine photo- lyase.
       0.549
Afer_1298
Hypothetical protein.
       0.458
Afer_1522
PFAM: Aldose 1-epimerase; KEGG: saq:Sare_0514 aldose 1-epimerase.
 
     0.409
Afer_1983
PFAM: aminotransferase class-III; KEGG: nca:Noca_3921 aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
     0.401
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.