STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1306PFAM: aldo/keto reductase; KEGG: nca:Noca_0658 aldo/keto reductase. (287 aa)    
Predicted Functional Partners:
Afer_1307
PFAM: alpha/beta hydrolase fold; KEGG: met:M446_4655 3-oxoadipate enol-lactonase.
       0.773
Afer_0716
PFAM: aldo/keto reductase; KEGG: mpa:MAP3260 hypothetical protein.
 
     0.730
Afer_1455
PFAM: aldo/keto reductase; KEGG: bac:BamMC406_2130 aldo/keto reductase.
 
     0.595
Afer_1303
KEGG: rha:RHA1_ro01286 DNA polymerase III delta subunit.
       0.553
Afer_1304
KEGG: ace:Acel_1839 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS.
       0.553
Afer_1305
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cau:Caur_0205 thioredoxin domain-containing protein.
       0.553
Afer_1841
KEGG: scl:sce5850 hypothetical protein.
 
    0.524
Afer_0098
PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; KEGG: mrd:Mrad2831_1356 putative circadian phase modifier CpmA-like protein.
 
    0.506
Afer_0099
PFAM: protein of unknown function DUF111; KEGG: mem:Memar_2158 hypothetical protein.
 
    0.483
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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