STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1310PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_5911 ABC transporter ATP-binding protein. (248 aa)    
Predicted Functional Partners:
Afer_1311
PFAM: protein of unknown function DUF214; KEGG: lxx:Lxx03110 integral membrane protein.
 
 
 0.994
Afer_1058
PFAM: protein of unknown function DUF214; KEGG: nca:Noca_2867 hypothetical protein.
  
 
 0.883
Afer_1207
KEGG: sma:SAV_4866 hypothetical protein.
   
 
 0.798
Afer_0173
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lxx:Lxx23070 ABC transporter, permease protein.
 
 
    0.794
Afer_1143
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_4338 binding-protein-dependent transport systems inner membrane component.
 
 
    0.757
Afer_0885
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: saq:Sare_4780 binding-protein-dependent transport systems inner membrane component.
 
 
    0.685
Afer_0888
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: saq:Sare_4780 binding-protein-dependent transport systems inner membrane component.
 
 
    0.678
Afer_1309
KEGG: mva:Mvan_4367 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
       0.636
aat
leucyl/phenylalanyl-tRNA/protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.
 
    0.634
Afer_0992
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msm:MSMEG_1372 ABC transporter ATP-binding protein.
 
    
0.561
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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