STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1331PFAM: extracellular solute-binding protein family 1; KEGG: sen:SACE_6262 putative ABC transporter substrate-binding protein. (464 aa)    
Predicted Functional Partners:
Afer_1329
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sen:SACE_6264 putative multiple sugar transport system permease protein.
 
 
 0.999
Afer_1330
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sen:SACE_6263 ABC sugar transporter, permease component.
 
 0.999
Afer_1327
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tfu:Tfu_1763 ABC-type sugar transport systems ATPase components; Belongs to the ABC transporter superfamily.
 
 
 0.996
Afer_1932
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cms:CMS_2522 putative ABC transporter ATP- binding subunit.
  
 
 0.803
Afer_1332
KEGG: nca:Noca_3918 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.
 
  
 0.680
Afer_1328
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: bra:BRADO0511 alpha-glucosidase.
 
  
 0.669
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.