STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1341PFAM: protein of unknown function DUF86; KEGG: mla:Mlab_0885 hypothetical protein. (127 aa)    
Predicted Functional Partners:
Afer_1342
PFAM: DNA polymerase beta domain protein region; KEGG: rca:Rcas_2416 DNA polymerase beta subunit.
 
  
 0.956
Afer_0033
Transcriptional regulator, XRE family; PFAM: DNA polymerase beta domain protein region; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: cmi:CMM_2452 Cro/CI family transcriptional regulator/nucleotidyltransferase.
 
  
 0.850
Afer_0034
PFAM: protein of unknown function DUF86; KEGG: tel:tll2231 hypothetical protein.
  
  
  0.849
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.412
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.