STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1416TIGRFAM: phage tail protein; KEGG: fre:Franean1_3826 phage tail protein. (174 aa)    
Predicted Functional Partners:
Afer_1418
PFAM: GPW/gp25 family protein; KEGG: sgr:SGR_2075 hypothetical protein.
 
 
 0.996
Afer_1424
PFAM: tail sheath protein; KEGG: fre:Franean1_3816 tail sheath protein.
 
 
 0.994
Afer_1417
KEGG: sco:SCO4244 hypothetical protein.
 
    0.960
Afer_1420
TIGRFAM: conserved hypothetical protein; KEGG: gsu:GSU0979 hypothetical protein.
 
     0.934
Afer_1422
KEGG: fre:Franean1_3818 secreted protein.
 
     0.930
Afer_1423
TIGRFAM: conserved hypothetical protein; KEGG: fre:Franean1_3817 phage tail protein.
 
     0.927
Afer_1419
Hypothetical protein; KEGG: ade:Adeh_0244 LigA.
       0.724
Afer_1421
KEGG: mlo:msr6553 hypothetical protein.
       0.705
Afer_0577
KEGG: oih:OB1441 hypothetical protein.
  
     0.522
Afer_0256
PFAM: metallophosphoesterase; KEGG: pzu:PHZ_c0307 3',5'-cyclic-nucleotide phosphodiesterase.
  
     0.489
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.