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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1430KEGG: nca:Noca_2000 hypothetical protein. (532 aa)    
Predicted Functional Partners:
Afer_1432
TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Male sterility domain; Haloacid dehalogenase domain protein hydrolase; NAD-dependent epimerase/dehydratase; KEGG: fal:FRAAL3759 putative fatty acyl CoA reductase.
 
     0.970
Afer_1431
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: fre:Franean1_4169 alcohol dehydrogenase.
 
     0.908
Afer_1429
PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: fre:Franean1_4167 phospholipid/glycerol acyltransferase.
 
     0.870
Afer_0098
PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; KEGG: mrd:Mrad2831_1356 putative circadian phase modifier CpmA-like protein.
 
  
 0.819
Afer_1841
KEGG: scl:sce5850 hypothetical protein.
 
  
 0.810
Afer_0099
PFAM: protein of unknown function DUF111; KEGG: mem:Memar_2158 hypothetical protein.
 
  
 0.633
Afer_1433
Hypothetical protein.
       0.617
Afer_0350
ATPase involved in chromosome partitioning; KEGG: fre:Franean1_0335 anion-transporting ATPase.
  
     0.554
Afer_0267
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sen:SACE_4714 6-O-methylguanine DNA methyltransferase.
  
     0.526
Afer_1140
PFAM: major facilitator superfamily MFS_1; KEGG: rxy:Rxyl_2414 major facilitator superfamily MFS_1.
  
     0.440
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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