STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1434PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: mse:Msed_0866 general substrate transporter. (460 aa)    
Predicted Functional Partners:
Afer_0948
PFAM: amino acid permease-associated region; KEGG: tac:Ta0427 L-asparagine permease related protein.
  
   0.587
Afer_1213
PFAM: amino acid permease-associated region; KEGG: tac:Ta0427 L-asparagine permease related protein.
  
   0.574
Afer_1433
Hypothetical protein.
       0.531
Afer_1035
PFAM: amino acid permease-associated region; KEGG: acr:Acry_0648 amino acid permease-associated region.
  
   0.515
Afer_1969
PFAM: amino acid permease-associated region; KEGG: acr:Acry_0648 amino acid permease-associated region.
  
   0.488
Afer_1968
PFAM: amino acid permease-associated region; KEGG: mva:Mvan_2919 amino acid permease-associated region.
  
   0.485
Afer_1181
PFAM: amino acid permease-associated region; KEGG: afe:Lferr_0867 amino acid permease-associated region.
  
   0.480
Afer_1429
PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: fre:Franean1_4167 phospholipid/glycerol acyltransferase.
  
   0.465
Afer_1995
TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: afe:Lferr_2531 ammonium transporter.
  
  
 0.454
Afer_1432
TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Male sterility domain; Haloacid dehalogenase domain protein hydrolase; NAD-dependent epimerase/dehydratase; KEGG: fal:FRAAL3759 putative fatty acyl CoA reductase.
     
 0.440
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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