STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1448KEGG: fre:Franean1_0153 major facilitator transporter. (426 aa)    
Predicted Functional Partners:
Afer_0938
PFAM: cyclase/dehydrase; KEGG: fal:FRAAL0171 hypothetical protein.
  
     0.735
Afer_0038
PFAM: transcriptional regulator PadR family protein; KEGG: fra:Francci3_4528 PadR family transcriptional regulator.
  
     0.731
Afer_0797
PFAM: acyl-ACP thioesterase; KEGG: nfa:nfa20140 hypothetical protein.
  
     0.656
Afer_0757
KEGG: sgr:SGR_5851 hypothetical protein.
  
     0.655
Afer_1612
KEGG: fal:FRAAL2179 putative DNA-directed DNA polymerase.
  
   
 0.631
Afer_1917
TIGRFAM: anti-sigma factor; KEGG: saq:Sare_4094 anti-sigma factor RshA.
  
     0.616
Afer_0580
PFAM: conserved hypothetical protein; KEGG: fal:FRAAL0333 hypothetical protein.
  
     0.615
Afer_0039
KEGG: ace:Acel_2136 hypothetical protein.
  
     0.611
Afer_1822
Hypothetical protein; KEGG: fal:FRAAL5121 putative integral membrane protein.
  
     0.600
Afer_1449
KEGG: afw:Anae109_1816 hypothetical protein.
  
    0.599
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.