STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1459KEGG: stp:Strop_0704 hypothetical protein. (155 aa)    
Predicted Functional Partners:
Afer_1457
PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: sco:SCO3340 hypothetical protein.
  
    0.777
Afer_1458
PFAM: Amidase; KEGG: sen:SACE_2834 secreted amidase.
       0.773
Afer_1460
PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases; helicase domain protein; KEGG: dau:Daud_0816 DEAD/DEAH box helicase domain- containing protein.
       0.773
Afer_1456
Hypothetical protein; KEGG: bpa:BPP4333 putative integral membrane protein.
       0.697
Afer_1291
PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: fre:Franean1_2773 XRE family transcriptional regulator.
  
     0.675
Afer_1140
PFAM: major facilitator superfamily MFS_1; KEGG: rxy:Rxyl_2414 major facilitator superfamily MFS_1.
  
     0.671
Afer_0236
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bur:Bcep18194_B3050 two component transcriptional regulator.
  
     0.638
Afer_0565
KEGG: mjl:Mjls_0441 ferredoxin (3Fe-4S).
  
     0.558
Afer_1562
PFAM: protein of unknown function DUF501; KEGG: rxy:Rxyl_0915 hypothetical protein.
 
     0.556
Afer_0346
KEGG: saq:Sare_3145 transcriptional regulator, TrmB.
  
     0.550
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.