STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1520PFAM: extracellular solute-binding protein family 5; KEGG: saq:Sare_4778 extracellular solute-binding protein. (610 aa)    
Predicted Functional Partners:
Afer_1986
PFAM: Ig family protein; KEGG: sus:Acid_0470 Ig family protein.
  
     0.679
Afer_0887
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO6113 peptide ABC transporter integral membrane protein.
 
 
 0.603
Afer_0867
PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bph:Bphy_6281 permease for cytosine/purines uracil thiamine allantoin; Belongs to the purine-cytosine permease (2.A.39) family.
  
     0.596
Afer_0781
KEGG: acr:Acry_2205 extracellular ligand-binding receptor.
  
  
 0.581
Afer_1142
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_4337 binding-protein-dependent transport systems inner membrane component.
 
 
 0.579
Afer_0809
KEGG: rha:RHA1_ro01772 hypothetical protein.
  
     0.529
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: fre:Franean1_1131 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.525
Afer_0296
PFAM: protein of unknown function DUF74; KEGG: afe:Lferr_1683 hypothetical protein.
  
     0.516
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
       0.516
Afer_1143
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_4338 binding-protein-dependent transport systems inner membrane component.
 
 
 0.496
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.