STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1562PFAM: protein of unknown function DUF501; KEGG: rxy:Rxyl_0915 hypothetical protein. (152 aa)    
Predicted Functional Partners:
Afer_1563
PFAM: carbon monoxide dehydrogenase subunit G; Activator of Hsp90 ATPase 1 family protein; KEGG: fre:Franean1_3210 carbon monoxide dehydrogenase subunit G.
 
     0.846
Afer_1564
KEGG: rxy:Rxyl_0118 4-diphosphocytidyl-2C-methyl-D- erythritol synthase.
       0.816
Afer_1565
PFAM: protein of unknown function DUF182; KEGG: sgr:SGR_1805 putative xanthine dehydrogenase.
       0.806
Afer_1566
PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: rha:RHA1_ro04978 hypothetical protein.
       0.786
Afer_1567
PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rha:RHA1_ro04979 MoxR family ATPase.
       0.784
Afer_1568
PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: sen:SACE_1160 carbon monoxide dehydrogenase, medium chain.
       0.778
Afer_1570
PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: sen:SACE_1161 putative carbon monoxide dehydrogenase small chain.
       0.761
Afer_1569
Carbon-monoxide dehydrogenase (acceptor); PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: rxy:Rxyl_0112 xanthine dehydrogenase, molybdenum binding subunit apoprotein.
       0.758
Afer_1292
PFAM: protein of unknown function DUF558; KEGG: afw:Anae109_0268 hypothetical protein.
  
     0.684
Afer_0346
KEGG: saq:Sare_3145 transcriptional regulator, TrmB.
  
     0.682
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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