STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1609PFAM: LmbE family protein; KEGG: sen:SACE_0909 N- acetylglucosaminylphosphatidylinositol deacetylase. (297 aa)    
Predicted Functional Partners:
mshD
Mycothiol biosynthesis acetyltransferase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol.
  
   
 0.855
Afer_1608
Hypothetical protein; KEGG: csa:Csal_1939 sterol-binding.
       0.781
Afer_0835
KEGG: saq:Sare_3891 hypothetical protein.
  
    0.777
Afer_0258
KEGG: cef:CE1107 hypothetical protein.
  
     0.765
Afer_1230
Cysteine--tRNA ligase; PFAM: Cysteinyl-tRNA synthetase class Ia; tRNA synthetase class I (M); KEGG: sma:SAV_6647 cysteinyl-tRNA synthetase.
  
 
 0.749
Afer_0259
KEGG: kra:Krad_1834 hypothetical protein.
  
     0.743
Afer_0680
PFAM: LmbE family protein; KEGG: cau:Caur_0355 LmbE family protein.
  
     0.700
Afer_1610
Hypothetical protein; KEGG: GK23692.
       0.608
Afer_0194
PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: rha:RHA1_ro01441 ATP-dependent Clp protease adaptor protein ClpS; Belongs to the ClpS family.
  
     0.603
Afer_0358
PFAM: glycosyl transferase group 1; KEGG: kra:Krad_0890 glycosyl transferase group 1.
  
  
 0.582
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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