STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1629PFAM: amino acid permease-associated region; KEGG: rso:RS02383 amino acid transporter transmembrane protein. (485 aa)    
Predicted Functional Partners:
Afer_2000
PFAM: amino acid permease-associated region; KEGG: msm:MSMEG_6701 amino acid permease.
  
     0.765
Afer_1213
PFAM: amino acid permease-associated region; KEGG: tac:Ta0427 L-asparagine permease related protein.
  
     0.712
Afer_0872
PFAM: amino acid permease-associated region; KEGG: mbn:Mboo_0439 amino acid permease-associated region.
  
     0.703
Afer_0948
PFAM: amino acid permease-associated region; KEGG: tac:Ta0427 L-asparagine permease related protein.
  
     0.694
Afer_1630
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cur:cur_1752 dehydrogenase related to short- chain alcohol dehydrogenases.
   
   0.500
Afer_1451
Cyclic nucleotide-binding protein; KEGG: mse:Msed_0469 hypothetical protein.
  
     0.426
Afer_1328
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: bra:BRADO0511 alpha-glucosidase.
   
 0.401
Afer_1778
KEGG: fal:FRAAL5900 trehalose synthase (maltose alpha-D-glucosyltransferase); TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
   
 0.401
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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