STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1631PFAM: protein of unknown function DUF255; KEGG: nfa:nfa48210 hypothetical protein. (650 aa)    
Predicted Functional Partners:
Afer_2006
PFAM: cellulose-binding family II; glycoside hydrolase family 5; SMART: cellulose-binding family II; KEGG: bte:BTH_I2402 glycosy hydrolase family protein.
   
 
 0.999
Afer_0065
PFAM: glycoside hydrolase family 5; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 
 0.856
Afer_0071
Hypothetical protein; KEGG: fal:FRAAL5406 glycine-rich cell wall structural protein precursor (partial match).
    
 
 0.781
Afer_1400
KEGG: ace:Acel_1702 secreted protein.
    
 
 0.781
Afer_1929
Hypothetical protein; KEGG: aba:Acid345_0662 parallel beta-helix repeat protein.
    
 
 0.781
Afer_1977
Hypothetical protein; KEGG: aba:Acid345_3948 NHL repeat protein.
    
 
 0.781
Afer_1630
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cur:cur_1752 dehydrogenase related to short- chain alcohol dehydrogenases.
       0.559
Afer_1632
Hypothetical protein.
       0.461
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.