STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1748PFAM: ABC-2 type transporter; KEGG: fra:Francci3_0724 hypothetical protein. (316 aa)    
Predicted Functional Partners:
Afer_1747
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL1238 ABC transporter ATP-binding protein (partial match).
 
 0.999
Afer_1971
PFAM: glycosyl transferase family 2; KEGG: mpo:Mpop_1840 glycosyl transferase family 2.
 
  
 0.915
Afer_1974
PFAM: glycosyl transferase family 2; KEGG: met:M446_0315 glycosyl transferase family protein.
 
  
 0.830
clpP-2
Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
       0.806
Afer_0746
PFAM: glycosyl transferase family 2; KEGG: ace:Acel_0460 glycosyl transferase family protein.
 
  
 0.646
Afer_0736
KEGG: sen:SACE_6472 putative dTDP-rhamnosyl transferase.
 
  
 0.643
Afer_0107
PFAM: Methyltransferase type 11; glycosyl transferase group 1; Methionine biosynthesis MetW protein; Methyltransferase type 12; KEGG: pcu:pc1183 putative mannosyltransferase.
 
  
 0.601
Afer_1976
PFAM: glycosyl transferase group 1; KEGG: pap:PSPA7_6239 glycosyltransferase WbpX.
 
  
 0.540
Afer_0743
PFAM: glycosyl transferase group 1; KEGG: ace:Acel_0448 glycosyl transferase, group 1.
 
  
 0.504
Afer_0744
PFAM: glycosyl transferase group 1; KEGG: fra:Francci3_0735 glycosyl transferase, group 1.
 
  
 0.491
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.