STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1772PFAM: peptidase C60 sortase A and B; KEGG: kra:Krad_3106 peptidase C60 sortase A and B. (228 aa)    
Predicted Functional Partners:
Afer_1997
PFAM: ribonuclease BN; KEGG: ace:Acel_1654 ribonuclease BN.
  
     0.682
Afer_0694
PFAM: major facilitator superfamily MFS_1; KEGG: ace:Acel_1472 major facilitator transporter.
  
     0.599
Afer_1773
Hypothetical protein.
       0.552
Afer_1774
PFAM: transposase IS3/IS911 family protein; KEGG: rxy:Rxyl_1861 transposase IS3/IS911.
       0.552
Afer_1775
PFAM: Integrase catalytic region; KEGG: amr:AM1_A0193 integrase, catalytic region.
  
    0.552
Afer_0868
PFAM: DoxX family protein; KEGG: dge:Dgeo_2087 DoxX.
  
     0.544
Afer_1255
PFAM: regulatory protein AsnC/Lrp family; KEGG: sma:SAV_2677 hypothetical protein.
  
     0.538
Afer_0256
PFAM: metallophosphoesterase; KEGG: pzu:PHZ_c0307 3',5'-cyclic-nucleotide phosphodiesterase.
  
   
 0.524
Afer_0157
Putative flagellar biosynthesis pathway protein; KEGG: nca:Noca_0741 flagellar biosynthetic protein FliR.
  
     0.504
Afer_1131
KEGG: sco:SCO1215 integral membrane protein.
  
     0.480
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.