STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Afer_1777Citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; KEGG: sgr:SGR_1172 putative lyase; Belongs to the HpcH/HpaI aldolase family. (312 aa)    
Predicted Functional Partners:
Afer_1874
PFAM: class II aldolase/adducin family protein; KEGG: sth:STH188 sugar isomerase.
   
    0.932
Afer_0223
KEGG: saq:Sare_4003 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12- binding domain protein.
  
 0.841
Afer_1193
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sen:SACE_1910 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
 
  
 0.818
Afer_2023
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: krh:KRH_05070 L-carnitine dehydratase/bile acid-inducible protein F family protein; Belongs to the CoA-transferase III family.
 
  
 0.768
Afer_1603
PFAM: MaoC domain protein dehydratase; KEGG: saq:Sare_0676 dehydratase.
 
  
 0.736
Afer_1780
TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: saq:Sare_3990 LAO/AO transport system ATPase.
       0.659
Afer_1779
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sen:SACE_6207 enoyl-CoA hydratase-isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.656
Afer_1778
KEGG: fal:FRAAL5900 trehalose synthase (maltose alpha-D-glucosyltransferase); TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
       0.651
murA
UDP-N-acetylglucosamine1- carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.651
Afer_1367
PFAM: AMP-dependent synthetase and ligase; KEGG: abo:ABO_0184 long-chain-fatty-acid-CoA ligase, putative.
 
    
 0.594
Your Current Organism:
Acidimicrobium ferrooxidans
NCBI taxonomy Id: 525909
Other names: A. ferrooxidans DSM 10331, Acidimicrobium ferrooxidans DSM 10331, Acidimicrobium ferrooxidans ICP, Acidimicrobium ferrooxidans str. DSM 10331, Acidimicrobium ferrooxidans strain DSM 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.